[Bug 24761] ProteoWizard 2.x 'msconvert' tool fails/hangs sometimes during processing of mass spec data files in RAW format

http://bugs.winehq.org/show_bug.cgi?id=24761

Anastasius Focht <focht(a)gmx.net> changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
             Status|UNCONFIRMED                 |RESOLVED
                URL|                            |http://proteowizard.sourcef
                   |                            |orge.net/downloads.shtml
           Keywords|                            |dotnet, download
                 CC|                            |focht(a)gmx.net
         Resolution|                            |FIXED
            Summary|ProteoWizard: Critical      |ProteoWizard 2.x
                   |section 00110060 wait       |'msconvert' tool
                   |failed                      |fails/hangs sometimes
                   |                            |during processing of mass
                   |                            |spec data files in RAW
                   |                            |format

--- Comment #6 from Anastasius Focht <focht(a)gmx.net> 2013-09-15 08:47:33 CDT ---
Hello folks,

seems to work for me.

Prerequisites: clean 32-bit WINEPREFIX, 'winetricks -q dotnet40' for newer 3.x
versions (old archived 2.x versions require 'winetricks -q dotnet20')

"MSFile Reader" -> http://sjsupport.thermofinnigan.com/public/detail.asp?id=703

(will automatically install VC++ 2008 and 2010 runtimes)

For testing I used some mass spec data in RAW format from this location:

http://www.chem.wisc.edu/~coon/Downloads/Morpheus/human/data/

--- snip ---
$ wine ./msconvert.exe 111108lockmass01.raw -g
...
format: mzML (Precision_64 [ 1000514:Precision_64 1000515:Precision_32 ],
ByteOrder_LittleEndian, Compression_None) indexed="true"
outputPath: .
extension: .mzML.gz
contactFilename: 

filters:

filenames:
  111108lockmass01.raw

processing file: 111108lockmass01.raw
...
writing output file: ./111108lockmass01.mzML.gz
--- snip ---

Largest tested was:

input "Velos1.raw" (759 MiB) -> output: "Velos1.mzML.gz" (1.6 GiB)

In 3.x versions there is a GUI tool which works fine too: "MSConvertGUI.exe"

$ du -sh pwiz-bin-windows-x86-vc100-release-3_0_4922.tar.bz2
28M    pwiz-bin-windows-x86-vc100-release-3_0_4922.tar.bz2

$ sha1sum pwiz-bin-windows-x86-vc100-release-3_0_4922.tar.bz2
d4264399fd97254872f7a895aea7b7f6bb835651 
pwiz-bin-windows-x86-vc100-release-3_0_4922.tar.bz2

$ wine --version
wine-1.7.2-75-gb89afc3

Regards

-- 
Configure bugmail: http://bugs.winehq.org/userprefs.cgi?tab=email
Do not reply to this email, post in Bugzilla using the
above URL to reply.
------- You are receiving this mail because: -------
You are watching all bug changes.