http://bugs.winehq.org/show_bug.cgi?id=11335
--- Comment #6 from Joerg Schiermeier newsletter@Schiermeier-Software.de 2008-05-07 14:43:33 --- Hello! In the latest version of wine (v0.9.61) this problem is fixed: now the settings are saved. Tested with 'The Bat! v3.99.24'.
(Other problems are still there. See bug report.)
Sincerely Joerg Schiermeier