http://bugs.winehq.org/show_bug.cgi?id=24761
Anastasius Focht focht@gmx.net changed:
What |Removed |Added ---------------------------------------------------------------------------- Status|UNCONFIRMED |RESOLVED URL| |http://proteowizard.sourcef | |orge.net/downloads.shtml Keywords| |dotnet, download CC| |focht@gmx.net Resolution| |FIXED Summary|ProteoWizard: Critical |ProteoWizard 2.x |section 00110060 wait |'msconvert' tool |failed |fails/hangs sometimes | |during processing of mass | |spec data files in RAW | |format
--- Comment #6 from Anastasius Focht focht@gmx.net 2013-09-15 08:47:33 CDT --- Hello folks,
seems to work for me.
Prerequisites: clean 32-bit WINEPREFIX, 'winetricks -q dotnet40' for newer 3.x versions (old archived 2.x versions require 'winetricks -q dotnet20')
"MSFile Reader" -> http://sjsupport.thermofinnigan.com/public/detail.asp?id=703
(will automatically install VC++ 2008 and 2010 runtimes)
For testing I used some mass spec data in RAW format from this location:
http://www.chem.wisc.edu/~coon/Downloads/Morpheus/human/data/
--- snip --- $ wine ./msconvert.exe 111108lockmass01.raw -g ... format: mzML (Precision_64 [ 1000514:Precision_64 1000515:Precision_32 ], ByteOrder_LittleEndian, Compression_None) indexed="true" outputPath: . extension: .mzML.gz contactFilename:
filters:
filenames: 111108lockmass01.raw
processing file: 111108lockmass01.raw ... writing output file: ./111108lockmass01.mzML.gz --- snip ---
Largest tested was:
input "Velos1.raw" (759 MiB) -> output: "Velos1.mzML.gz" (1.6 GiB)
In 3.x versions there is a GUI tool which works fine too: "MSConvertGUI.exe"
$ du -sh pwiz-bin-windows-x86-vc100-release-3_0_4922.tar.bz2 28M pwiz-bin-windows-x86-vc100-release-3_0_4922.tar.bz2
$ sha1sum pwiz-bin-windows-x86-vc100-release-3_0_4922.tar.bz2 d4264399fd97254872f7a895aea7b7f6bb835651 pwiz-bin-windows-x86-vc100-release-3_0_4922.tar.bz2
$ wine --version wine-1.7.2-75-gb89afc3
Regards