http://bugs.winehq.org/show_bug.cgi?id=8233
--- Comment #9 from Renato Alves simpledark@gmail.com 2009-11-20 04:03:48 --- The problem is still present as of wine 1.1.31 but now seems partially fixed.
This time I ran Apprentice with the show desktop option enabled and I only get one window in the window manager, not two as before. In addition, resizing the Apprentice window also resized the chat window.
However the focus option is still being ignored. You can go to Apprentice menu and select the option to make the chat window be on top, but when you click the play area it's still put behind the main one.