http://bugs.winehq.org/show_bug.cgi?id=31533
--- Comment #5 from Dan Kegel dank@kegel.com 2012-08-23 10:02:24 CDT --- Are you setting WINEPREFIX properly when starting from commandline? e.g.
WINEPREFIX="/home/atul/.mynewwine32prefix" wine ONENOTE.EXE &> ~/log.txt